Stem-loop bma-mir-87a

Accession

MI0013335

Description

Brugia malayi bma-mir-87a precursor miRNA

Literature search

1 open access papers mention bma-mir-87a
(1 sentences)

Sequence

2036525 reads, 14839.0 reads per million, 26 experiments

agugcucggCGCCUGGGACUUCGACUCAACCUaaguauuuucaaguguagGUGAGCAAAGUUUCAGGUGUUcgagcgccuucgcauuuucc
.((((((((((((((((((((.(.((((.((((..((((....))))))))))))).)))))))))))).)))))))).............

Structure

------------a        -            C A    A    ag    u 
             gugcucgg CGCCUGGGACUU G CUCA CCUa  uauu u
             |||||||| |||||||||||| | |||| ||||  ||||  
             cgcgagcU GUGGACUUUGAA C GAGU Ggau  guga c
ccuuuuacgcuuc        U            A -    -    --    a 

Annotation confidence High

Genome context

Bmal_v3_scaffold141: 63125-63215 [-]

Mature bma-miR-87a-5p

• Accession: MIMAT0057209
• Description: Brugia malayi bma-miR-87a-5p mature miRNA
• Sequence: 10 - CGCCUGGGACUUCGACUCAACCU - 32
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bma-miR-87a-3p

• Accession: MIMAT0014109
• Description: Brugia malayi bma-miR-87a-3p mature miRNA
• Sequence: 51 - GUGAGCAAAGUUUCAGGUGUU - 71
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498