miRBase entry: bma-mir-71

Stem-loop bma-mir-71


Accession
MI0013332
Description
Brugia malayi bma-mir-71 precursor miRNA

Literature search
4 open access papers mention bma-mir-71
(39 sentences)

Sequence

agcaugcugugugucgguggUGAAAGACAUGGGUAGUGAgacguuagaauuucaaggucguaucacuauucuguuuuucgccucguaucac
........(((...(((.(((((((((((.((((((((((((.((........)).)))...)))))))))))))))))))))))...)))

Structure
agcaugcu   ugu   u           U         ---   g  aga 
        gug   cgg ggUGAAAGACA GGGUAGUGA   gac uu   a
        |||   ||| ||||||||||| |||||||||   ||| ||    
        cac   gcu ccgcuuuuugu cuuaucacu   cug aa   u
--------   uau   -           -         aug   g  cuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Bmal_v3_scaffold75: 45674-45764 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-71
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-71

Accession MIMAT0014106
Description Brugia malayi bma-miR-71 mature miRNA
Sequence 21 - UGAAAGACAUGGGUAGUGA - 39
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498