miRBase entry: bma-mir-9

Stem-loop bma-mir-9


Accession
MI0013326
Description
Brugia malayi bma-mir-9 precursor miRNA

Literature search
3 open access papers mention bma-mir-9
(9 sentences)

Sequence

guauugcaacuuuaCUUUGGUUAUCUAGCUGUAUGAguaaguuacuggcuucAUAAAGCUAGGUUACCAAAGCUaagcacaauac
((((((...(((..(((((((.((((((((.(((((((.........)).))))).)))))))).)))))))..)))..))))))

Structure
      caa   ua       U        G     -  aag 
guauug   cuu  CUUUGGU AUCUAGCU UAUGA gu   u
||||||   |||  ||||||| |||||||| ||||| ||   u
cauaac   gaa  GAAACCA UGGAUCGA AUAcu cg   a
      -ac   UC       U        A     u  guc 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold1: 3047960-3048044 [-]

Database links

Mature bma-miR-9-5p

Accession MIMAT0014100
Description Brugia malayi bma-miR-9-5p mature miRNA
Sequence 15 - CUUUGGUUAUCUAGCUGUAUGA - 36
Evidence experimental
Illumina [2]

Mature bma-miR-9-3p

Accession MIMAT0014108
Description Brugia malayi bma-miR-9-3p mature miRNA
Sequence 53 - AUAAAGCUAGGUUACCAAAGCU - 74
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498