Stem-loop bma-mir-2b-2

Accession

MI0013323

Description

Brugia malayi bma-mir-2b-2 precursor miRNA

Literature search

4 open access papers mention bma-mir-2b-2
(38 sentences)

Sequence

292903 reads, 23249.0 reads per million, 26 experiments

gagcgguAGUUGUAUCGUCUGUGAUAUGuuguauaauugguuguugcucaCAUCACAGACCCGAUGCAGCGACugcacuugugcuacucccg
..(((((.(((((((((((((((((.((..(((..(.....)..))).)).)))))))))..)))))))).)))))................

Structure

--------------ga     A        --         A  uu   ua u 
                gcggu GUUGUAUC  GUCUGUGAU UG  gua  a u
                ||||| ||||||||  ||||||||| ||  |||  | g
                cguCA CGACGUAG  CAGACACUA ac  cgu  u g
gcccucaucguguuca     G        CC         C  -u   ug u 

Annotation confidence High

Genome context

Bmal_v3_scaffold153: 3307-3398 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from bma-mir-2b-2

Mature bma-miR-2b-5p

• Accession: MIMAT0037375
• Description: Brugia malayi bma-miR-2b-5p mature miRNA
• Sequence: 8 - AGUUGUAUCGUCUGUGAUAUG - 28
• Evidence: experimental ; Illumina [2]

Mature bma-miR-2b-3p

• Accession: MIMAT0014097
• Description: Brugia malayi bma-miR-2b-3p mature miRNA
• Sequence: 51 - CAUCACAGACCCGAUGCAGCGAC - 73
• Evidence: experimental ; cloned [1], Northern [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498