miRBase entry: bma-mir-2b-1

Stem-loop bma-mir-2b-1


Accession
MI0013322
Description
Brugia malayi bma-mir-2b-1 precursor miRNA

Literature search
3 open access papers mention bma-mir-2b-1
(37 sentences)

Sequence

gagcgguaguuguaucggcugugauauguuguaugauugguuguugcucacAUCACAGACCCGAUGCAGCGAcugcacuugugcuacucccg
..(((((.(((((((((((((((((.((..(((...........))).)).)))))))..)))))))))).)))))................

Structure
--------------ga     a          --       a  uu   ugau 
                gcggu guuguaucgg  cugugau ug  gua    u
                ||||| ||||||||||  ||||||| ||  |||    g
                cgucA CGACGUAGCC  GACACUA ac  cgu    g
gcccucaucguguuca     G          CA       c  -u   uguu 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold153: 8299-8390 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from bma-mir-2b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-2b-3p

Accession MIMAT0014097
Description Brugia malayi bma-miR-2b-3p mature miRNA
Sequence 52 - AUCACAGACCCGAUGCAGCGA - 72
Evidence experimental
cloned [1], Northern [1], Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498