miRBase entry: bma-mir-2a

Stem-loop bma-mir-2a


Accession
MI0013321
Description
Brugia malayi bma-mir-2a precursor miRNA

Literature search
3 open access papers mention bma-mir-2a
(33 sentences)

Sequence

uucuccgacacgucaaaguggucagugaugugucgcaaaaugaaauucaUAUCACAGCCAGCUUUGAUGUguugugcgcuugucgacccau
.....(((((((((((((((((..((((((((...............)))))))).)))).))))))))))))).................

Structure
------------uucuc             -    ca        ucgcaa 
                 cgacacgucaaag uggu  gugaugug      a
                 ||||||||||||| ||||  ||||||||      a
                 guugUGUAGUUUC ACCG  CACUAUac      u
uacccagcuguucgcgu             G    -A        uuaaag 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold75: 41811-41901 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-2a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-2a

Accession MIMAT0014096
Description Brugia malayi bma-miR-2a mature miRNA
Sequence 50 - UAUCACAGCCAGCUUUGAUGU - 70
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498