miRBase entry: bma-let-7

Stem-loop bma-let-7


Accession
MI0013319
Description
Brugia malayi bma-let-7 precursor miRNA

Literature search
5 open access papers mention bma-let-7
(29 sentences)

Sequence

augcuaacgacccugaaugauagcuugcucgaUGAGGUAGUAGGUUGUAUAGUUaugaguuguaccauaaucggagaaacuguccagccugcuagcuugccgugcgggucuaucauccgucccc
........(((...((.(((((((((((.((.((((.((((((((((.(((((((((........)))).........))))).)))))))))).)))).)).))))).)))))))).)))...

Structure
augcuaac   ccu  a      -     u  a    G          U     ---------    agu 
        gac   ga ugauag cuugc cg UGAG UAGUAGGUUG AUAGU         Uaug   u
        |||   || |||||| ||||| || |||| |||||||||| |||||         ||||    
        cug   cu acuauc gggcg gc guuc aucguccgac uguca         auac   g
-----ccc   --c  -      u     u  c    g          c     aagaggcua    cau 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold247: 47896-48019 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-let-7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-let-7

Accession MIMAT0014094
Description Brugia malayi bma-let-7 mature miRNA
Sequence 33 - UGAGGUAGUAGGUUGUAUAGUU - 54
Evidence experimental
Northern [1], Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498