Stem-loop csi-MIR398a

Accession

MI0013305

Description

Citrus sinensis csi-MIR398a precursor miRNA

Literature search

3 open access papers mention csi-MIR398a
(8 sentences)

Sequence

caacagaugugaaaccccagaggagugaaccugAGAACAGAGGGUGGCGUUGGCUuaaauuugauuugcauugcugcugccugcuccugccauacauuaaaucaaaaagauuguauguggccaacgcaccuUGUGUUCUCAGGUCACCCCUUugggaauucaauugucaaucagcacgugucaucaaguuacucaauugcucuaacauucgcugcuucugauuca
.........((((..((((((((.((((.((((((((((.((((((.((((((((............(((..((....)).))).........((((..((((.....))))..)))))))))))))))))).)))))))))))))).))))))))..))))...((((..((((..((((.....(((.........)))...))))..))))....))))...

Structure

------------------------------------------------------caacagaug    ac        a    a          G      G        uaaauuugauuugcauugcugcugccugcu 
                                                               ugaa  cccagagg guga ccugAGAACA AGGGUG CGUUGGCU                              c
                                                               ||||  |||||||| |||| |||||||||| |||||| ||||||||                              c
                                                               acuu  ggguUUCC CACU GGACUCUUGU Uuccac gcaaccgg                              u
acuuagucuucgucgcuuacaaucucguuaacucauugaacuacugugcacgacuaacuguua    aa        C    -          G      -        uguauguuagaaaaacuaaauuacauaccg 

Annotation confidence Not enough data

Genome context

chr7: 1333347-1333571 [+]

Mature csi-miR398a-3p

• Accession: MIMAT0014079
• Description: Citrus sinensis csi-miR398a-3p mature miRNA
• Sequence: 132 - UGUGUUCUCAGGUCACCCCUU - 152
• Evidence: experimental ; Northern [1], Illumina [2]

Mature csi-miR398a-5p

• Accession: MIMAT0037372
• Description: Citrus sinensis csi-miR398a-5p mature miRNA
• Sequence: 34 - AGAACAGAGGGUGGCGUUGGCU - 55
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113