Stem-loop zma-MIR399i

Accession

MI0013235

Description

Zea mays zma-MIR399i precursor miRNA

Literature search

22 open access papers mention zma-MIR399i
(66 sentences)

Sequence

302 reads, 1216 reads per million, 8 experiments

aGUGCGGCUCUCCUCUGGCAUGagggcgcgacugagaggcacgaacaguuucuggccuucuccugccaaUGCCAAAGGAGAGUUGCCCUGc
((.(((((((((((.((((((...((((.(...(((((((..(((....)))..))).))))))))).)))))).))))))))))).))..

Structure

--  U           C      Gag    c acu    -   ac   c 
  aG GCGGCUCUCCU UGGCAU   ggcg g   gaga ggc  gaa a
  || ||||||||||| ||||||   |||| |   |||| |||  |||  
  UC CGUUGAGAGGA ACCGUa   ccgu c   cucu ccg  cuu g
cG  C           A      --a    - ---    u   gu   u 

Annotation confidence High

Genome context

chr5: 150372041-150372131 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR399i

Mature zma-miR399i-5p

• Accession: MIMAT0015358
• Description: Zea mays zma-miR399i-5p mature miRNA
• Sequence: 2 - GUGCGGCUCUCCUCUGGCAUG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR399i-3p

• Accession: MIMAT0014024
• Description: Zea mays zma-miR399i-3p mature miRNA
• Sequence: 70 - UGCCAAAGGAGAGUUGCCCUG - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716