Stem-loop zma-MIR396g

Accession

MI0013227

Description

Zea mays zma-MIR396g precursor miRNA

Literature search

23 open access papers mention zma-MIR396g
(79 sentences)

Sequence

753 reads, 0 reads per million, 4 experiments

uUCCCACAGCUUUAUUGAACUGcccucuugcuugcuuggaucaauugaaacucgaucagguccacagcacagccugcugcaugcaugaugcaGUUCAAGAAAGCUGUGGAAGAu
...((((((((((.(((((((((..((.(((.(((.((((((.(((((...)))))..)))))).((((.....))))))).))).)).))))))))).)))))))))).....

Structure

--uUC          A         cc  u   u   -------------u      -a     a 
     CCACAGCUUU UUGAACUGc  uc ugc ugc              uggauc  auuga  
     |||||||||| |||||||||  || ||| |||              ||||||  ||||| a
     GGUGUCGAAA AACUUGacg  ag acg acg              accugg  uagcu  
uAGAA          G         -u  u   u   ucguccgacacgac      ac     c 

Annotation confidence Not enough data

Genome context

chr5: 220222148-220222261 [+]

Mature zma-miR396g-5p

• Accession: MIMAT0014016
• Description: Zea mays zma-miR396g-5p mature miRNA
• Sequence: 2 - UCCCACAGCUUUAUUGAACUG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR396g-3p

• Accession: MIMAT0015351
• Description: Zea mays zma-miR396g-3p mature miRNA
• Sequence: 93 - GUUCAAGAAAGCUGUGGAAGA - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716