Stem-loop ssc-mir-1285

Accession

MI0013164

Description

Sus scrofa ssc-mir-1285 precursor miRNA

Literature search

2 open access papers mention ssc-mir-1285
(4 sentences)

Sequence

192 reads, 57 reads per million, 11 experiments

gcugaucaguagugggaucgcgccugugaauagccacuguacuccagcCUGGGCAACAUAGCGAGACCCCGUcucuuuug
.......((.((((((.((.(((.((((....(((...((......))...)))..))))))).)).)))).))))....

Structure

gcugauc  u  -    a  g   c    aaua   acu  ac 
       ag ag uggg uc cgc ugug    gcc   gu  u
       || || |||| || ||| ||||    |||   ||   
       uc uc GCCC AG GCG AUAC    CGG   cg  c
---guuu  -  U    C  A   -    --AA   GUC  ac 

Annotation confidence Low

Genome context

chr1: 199694416-199694495 [-]

Mature ssc-miR-1285

• Accession: MIMAT0013954
• Description: Sus scrofa ssc-miR-1285 mature miRNA
• Sequence: 49 - CUGGGCAACAUAGCGAGACCCCGU - 72
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100