Stem-loop ssc-mir-935

Accession

MI0013156

Description

Sus scrofa ssc-mir-935 precursor miRNA

Literature search

2 open access papers mention ssc-mir-935
(2 sentences)

Sequence

12482 reads, 21.0 reads per million, 146 experiments

ggcgcaggcggcAGUGGCGGGAGCGGCCCCUCGGCcauccuccgucugcCCAGUUACCGCUUCCGCUACCGCcgccgcuc
...((.((((((.(((((((((((((...((.(((............))).))...))))))))))))).))))))))..

Structure

ggc  a      A             CCC  C   caucc 
   gc ggcggc GUGGCGGGAGCGG   CU GGC     u
   || |||||| |||||||||||||   || |||      
   cg ccgcCG CAUCGCCUUCGCC   GA Ccg     c
-cu  -      C             AUU  C   ucugc 

Annotation confidence High

Genome context

chr6: 53057502-53057581 [+]

Mature ssc-miR-935-5p

• Accession: MIMAT0052639
• Description: Sus scrofa ssc-miR-935-5p mature miRNA
• Sequence: 13 - AGUGGCGGGAGCGGCCCCUCGGC - 35
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-935-3p

• Accession: MIMAT0013947
• Description: Sus scrofa ssc-miR-935-3p mature miRNA
• Sequence: 50 - CCAGUUACCGCUUCCGCUACCGC - 72
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100