Stem-loop ssc-mir-127

Accession

MI0013144

Description

Sus scrofa ssc-mir-127 precursor miRNA

Literature search

13 open access papers mention ssc-mir-127
(47 sentences)

Sequence

27 reads, 9 reads per million, 10 experiments

aucgcugucuccagccugcugaagcucagagggcucugauucagaaagaucaUCGGAUCCGUCUGAGCUUGGCUggucgg
....(((...((((((.....(((((((((.((.((((((((.....))..)))))).)).))))))))))))))).)))

Structure

aucg   ucu      ugcug         g  c      --  a 
    cug   ccagcc     aagcucaga gg ucugau  uc g
    |||   ||||||     ||||||||| || ||||||  || a
    ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
----   --u      -----         G  U      cu  a 

Annotation confidence Not enough data

Genome context

chr7: 132099553-132099632 [+]

Mature ssc-miR-127

• Accession: MIMAT0013932
• Description: Sus scrofa ssc-miR-127 mature miRNA
• Sequence: 53 - UCGGAUCCGUCUGAGCUUGGCU - 74
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100