Stem-loop ssc-mir-424

Accession

MI0013135

Description

Sus scrofa ssc-mir-424 precursor miRNA

Literature search

17 open access papers mention ssc-mir-424
(107 sentences)

Sequence

460646 reads, 336.0 reads per million, 206 experiments

uccgaggggaugCAGCAGCAAUUCAUGUUUUGAagggcuuuaaaugguuCAAAACGUGAGGCGCUGCUAUAcccccucgc
..(((((((.((.((((((..((((((((((((...(((......)))))))))))))))..)))))).)).))))))).

Structure

uc       a  C      AA            agg   uu 
  cgagggg ug AGCAGC  UUCAUGUUUUGA   gcu  a
  ||||||| || ||||||  ||||||||||||   |||   
  gcucccc AU UCGUCG  GAGUGCAAAACu   ugg  a
-c       c  A      CG            ---   ua 

Annotation confidence High

Genome context

Unknown

Mature ssc-miR-424-5p

• Accession: MIMAT0013920
• Description: Sus scrofa ssc-miR-424-5p mature miRNA
• Sequence: 13 - CAGCAGCAAUUCAUGUUUUGA - 33
• Evidence: experimental ; Illumina [1,3], cloned [2]

Mature ssc-miR-424-3p

• Accession: MIMAT0013921
• Description: Sus scrofa ssc-miR-424-3p mature miRNA
• Sequence: 50 - CAAAACGUGAGGCGCUGCUAUA - 71
• Evidence: experimental ; Illumina [1,3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328