Stem-loop ssc-mir-425

Accession

MI0013133

Description

Sus scrofa ssc-mir-425 precursor miRNA

Literature search

2 open access papers mention ssc-mir-425
(9 sentences)

Sequence

275 reads, 67 reads per million, 12 experiments

aagugcuuuggAAUGACACGAUCACUCCCGUUGAgugggcacccaaguagccAUCGGGAAUGUCGUGUCCGCCCagugcu
....((.((((...(((((((.((.(((((....((((..((....))..))))))))).)))))))))...)))).)).

Structure

aagu  u    AAU       U  C     UUGA    gc  c 
    gc uugg   GACACGA CA UCCCG    gugg  ac c
    || ||||   ||||||| || |||||    ||||  ||  
    cg gaCC   CUGUGCU GU AGGGC    UAcc  ug a
---u  u    CGC       -  A     ----    ga  a 

Annotation confidence High

Genome context

chr13: 34898111-34898190 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-425

Mature ssc-miR-425-5p

• Accession: MIMAT0013917
• Description: Sus scrofa ssc-miR-425-5p mature miRNA
• Sequence: 12 - AAUGACACGAUCACUCCCGUUGA - 34
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-425-3p

• Accession: MIMAT0013918
• Description: Sus scrofa ssc-miR-425-3p mature miRNA
• Sequence: 53 - AUCGGGAAUGUCGUGUCCGCCC - 74
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100