Stem-loop ssc-mir-100

Accession

MI0013128

Description

Sus scrofa ssc-mir-100 precursor miRNA

Literature search

22 open access papers mention ssc-mir-100
(34 sentences)

Sequence

11391996 reads, 10698.0 reads per million, 214 experiments

aggccuguugccacaAACCCGUAGAUCCGAACUUGUGcugauagugcacaCAAGCUUGUGUCUAUAGGUAUgugucugug
.(((.....)))(((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).))).......

Structure

aggccuguugcc   A   C      C   A      c  au 
            aca ACC GUAGAU CGA CUUGUG ug  a
            ||| ||| |||||| ||| |||||| ||   
            ugU UGG UAUCUG GUU GAACac ac  g
-----gugucug   A   A      U   C      -  gu 

Annotation confidence High

Genome context

chr9: 54383382-54383461 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-100

Mature ssc-miR-100-5p

• Accession: MIMAT0013911
• Description: Sus scrofa ssc-miR-100-5p mature miRNA
• Sequence: 16 - AACCCGUAGAUCCGAACUUGUG - 37
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

Mature ssc-miR-100-3p

• Accession: MIMAT0052627
• Description: Sus scrofa ssc-miR-100-3p mature miRNA
• Sequence: 51 - CAAGCUUGUGUCUAUAGGUAU - 71
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100