Stem-loop ssc-mir-192

Accession

MI0013127

Description

Sus scrofa ssc-mir-192 precursor miRNA

Literature search

33 open access papers mention ssc-mir-192
(177 sentences)

Sequence

44541017 reads, 16494.0 reads per million, 208 experiments

gcacagggcuCUGACCUAUGAAUUGACAGCCagugcucucaucuccccucuggCUGCCAAUUCCAUAGGUCACAGguaug
...((.(.((.((((((((((((((.(((((((................))))))).))))).))))))))).)).).))

Structure

gca  g g  C         -     A       ugcucuc 
   ca g cu UGACCUAUG AAUUG CAGCCag       a
   || | || ||||||||| ||||| |||||||        
   gu u GA ACUGGAUAC UUAAC GUCgguc       u
---  a g  C         C     C       uccccuc 

Annotation confidence High

Genome context

chr2: 6416980-6417059 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-192

Mature ssc-miR-192-5p

• Accession: MIMAT0013910
• Description: Sus scrofa ssc-miR-192-5p mature miRNA
• Sequence: 11 - CUGACCUAUGAAUUGACAGCC - 31
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-192-3p

• Accession: MIMAT0052626
• Description: Sus scrofa ssc-miR-192-3p mature miRNA
• Sequence: 54 - CUGCCAAUUCCAUAGGUCACAG - 75
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100