Stem-loop ssc-mir-664

Accession

MI0013123

Description

Sus scrofa ssc-mir-664 precursor miRNA

Literature search

3 open access papers mention ssc-mir-664
(10 sentences)

Sequence

16 reads, 10 reads per million, 6 experiments

gaacauugaaaCAGGCUAGGAGAAGUGAUUGGAUagaaaaugguauucUAUUCAUUUAUCUCCCAGCCUACAaaaagaaa
............(((((.(((((..(((.(((((((((.......))))))))).)))))))).)))))...........

Structure

gaacauugaaaC     A     AG   U         aa 
            AGGCU GGAGA  UGA UGGAUagaa  u
            ||||| |||||  ||| |||||||||  g
            UCCGA CCUCU  AUU ACUUAUcuu  g
-aaagaaaaACA     C     --   U         au 

Annotation confidence Not enough data

Genome context

chr10: 11890513-11890592 [+]

Mature ssc-miR-664-5p

• Accession: MIMAT0013906
• Description: Sus scrofa ssc-miR-664-5p mature miRNA
• Sequence: 12 - CAGGCUAGGAGAAGUGAUUGGAU - 34
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-664-3p

• Accession: MIMAT0013907
• Description: Sus scrofa ssc-miR-664-3p mature miRNA
• Sequence: 49 - UAUUCAUUUAUCUCCCAGCCUACA - 72
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100