Stem-loop ssc-mir-98

Accession

MI0013122

Description

Sus scrofa ssc-mir-98 precursor miRNA

Literature search

15 open access papers mention ssc-mir-98
(33 sentences)

Sequence

941467 reads, 821.0 reads per million, 214 experiments

gggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuuaggccccaauuagaagauaaCUAUACAACUUACUACUUU
....(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))

Structure

gggU                 U    ---------      aggg 
    GAGGUAGUAAGUUGUAU GUUg         uggggu    a
    ||||||||||||||||| ||||         ||||||    u
    UUUCAUCAUUCAACAUA Caau         accccg    u
----                 U    agaagauua      gauu 

Annotation confidence Medium

Genome context

chrX: 51800864-51800943 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-98

Mature ssc-miR-98-5p

• Accession: MIMAT0013905
• Description: Sus scrofa ssc-miR-98-5p mature miRNA
• Sequence: 4 - UGAGGUAGUAAGUUGUAUUGUU - 25
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-98-3p

• Accession: MIMAT0052623
• Description: Sus scrofa ssc-miR-98-3p mature miRNA
• Sequence: 62 - CUAUACAACUUACUACUUU - 80
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100