miRBase entry: ssc-mir-885

Stem-loop ssc-mir-885


Accession
MI0013119
Description
Sus scrofa ssc-mir-885 precursor miRNA

Literature search
3 open access papers mention ssc-mir-885
(4 sentences)

Sequence

cacucggcccgcgcucucUCCAUUACACUACCCUGCCUCUucuccacgagAGGCAGCGGGGUGUAGUGGAUagagcacgg
........(((.(((((.(((((((((((.(((((((((((......))))))))).))))))))))))).))))).)))

Structure
cacucggc   c     c           A  -         cu 
        ccg gcucu UCCAUUACACU CC CUGCCUCUu  c
        ||| ||||| ||||||||||| || |||||||||   
        ggc cgaga AGGUGAUGUGG GG GACGGAgag  c
--------   a     U           -  C         ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssc-miR-885-5p

Accession MIMAT0013902
Description Sus scrofa ssc-miR-885-5p mature miRNA
Sequence 19 - UCCAUUACACUACCCUGCCUCU - 40
Evidence experimental
Illumina [1,3-5], cloned [2]

Mature ssc-miR-885-3p

Accession MIMAT0013903
Description Sus scrofa ssc-miR-885-3p mature miRNA
Sequence 51 - AGGCAGCGGGGUGUAGUGGAU - 71
Evidence experimental
Illumina [1,3-5]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100