Stem-loop ssc-mir-423

Accession

MI0013099

Description

Sus scrofa ssc-mir-423 precursor miRNA

Literature search

12 open access papers mention ssc-mir-423
(23 sentences)

Sequence

602 reads, 160 reads per million, 15 experiments

aaguuaggcUGAGGGGCAGAGAGCGAGACUUUucuauuuuccaaaAGCUCGGUCUGAGGCCCCUCAGUcuugcuuccuac
((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))).....

Structure

-----    u            -AG   G    A     cua 
     aagu aggcUGAGGGGC   AGA CGAG CUUUu   u
     |||| ||||||||||||   ||| |||| |||||   u
     uucg ucUGACUCCCCG   UCU GCUC GAaaa   u
caucc    u            GAG   G    -     ccu 

Annotation confidence High

Genome context

chr12: 48287019-48287098 [-]

Mature ssc-miR-423-5p

• Accession: MIMAT0013880
• Description: Sus scrofa ssc-miR-423-5p mature miRNA
• Sequence: 10 - UGAGGGGCAGAGAGCGAGACUUU - 32
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-423-3p

• Accession: MIMAT0013881
• Description: Sus scrofa ssc-miR-423-3p mature miRNA
• Sequence: 46 - AGCUCGGUCUGAGGCCCCUCAGU - 68
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100