Stem-loop ssc-mir-206

Accession

MI0013084

Description

Sus scrofa ssc-mir-206 precursor miRNA

Literature search

30 open access papers mention ssc-mir-206
(191 sentences)

Sequence

9 reads, 7 reads per million, 6 experiments

uucccgaggccacaugcuucuuuauauccccauacggauuacuugacuaUGGAAUGUAAGGAAGUGUGUGAucucguuaa
....(((((.(((((((((((((((((..(((((.(..........)))))).))))))))))))))))).)))))....

Structure

uucc     c                 cc     c gauu 
    cgagg cacaugcuucuuuauau  ccaua g    a
    ||||| |||||||||||||||||  ||||| |     
    gcucu GUGUGUGAAGGAAUGUA  GGUau c    c
aauu     A                 -A     - aguu 

Annotation confidence Not enough data

Genome context

chr7: 52426445-52426524 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-206

Mature ssc-miR-206

• Accession: MIMAT0013864
• Description: Sus scrofa ssc-miR-206 mature miRNA
• Sequence: 50 - UGGAAUGUAAGGAAGUGUGUGA - 71
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100