Stem-loop rno-mir-202

Accession

MI0012584

Description

Rattus norvegicus rno-mir-202 precursor miRNA

Literature search

4 open access papers mention rno-mir-202
(6 sentences)

Sequence

25760 reads, 561 reads per million, 72 experiments

guuccuuuUUCCUAUGCAUAUACUUCUuuguggaucuggucuaaAGAGGUAUAGCGCAUGGGAAAauggagc
(((((.(((((((((((.((((((((((..(((((...)))))))))))))))..))))))))))).)))))

Structure

     u           -A          ug     c 
guucc uuUUCCUAUGC  UAUACUUCUu  uggau  
||||| |||||||||||  ||||||||||  ||||| u
cgagg aAAAGGGUACG  AUAUGGAGAa  aucug  
     u           CG          --     g 

Annotation confidence High

Genome context

chr1: 212295630-212295701 [-]

Mature rno-miR-202-5p

• Accession: MIMAT0012822
• Description: Rattus norvegicus rno-miR-202-5p mature miRNA
• Sequence: 9 - UUCCUAUGCAUAUACUUCU - 27
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-202-3p

• Accession: MIMAT0017355
• Description: Rattus norvegicus rno-miR-202-3p mature miRNA
• Sequence: 45 - AGAGGUAUAGCGCAUGGGAAA - 65
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39