miRBase entry: mdo-mir-429

Stem-loop mdo-mir-429


Accession
MI0012497
Description
Monodelphis domestica mdo-mir-429 precursor miRNA


Sequence

4837 reads, 105.0 reads per million, 4 experiments
gauuggugUCUUACCAGACAAAGUUAGAUCucgcuauuucugucUAAUACUGUCUGGUAAUGCCAUugguca
((((((((.(((((((((((..(((((((............)))))))..)))))))))).).)))))))).

Structure
-        U -          AA       Cucgc 
 gauuggug C UUACCAGACA  GUUAGAU     u
 |||||||| | ||||||||||  |||||||      
 cugguUAC G AAUGGUCUGU  UAAUcug     a
a        C U          CA       ucuuu 


Annotation confidence High
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Genome context
ref|NC_077230.1|: 415656656-415656727 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-mir-429
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-429-5p

Accession MIMAT0061149
Description Monodelphis domestica mdo-miR-429-5p mature miRNA
Sequence 9 - UCUUACCAGACAAAGUUAGAUC - 30
Evidence experimental
Illumina [1]

Mature mdo-miR-429-3p

Accession MIMAT0012741
Description Monodelphis domestica mdo-miR-429-3p mature miRNA
Sequence 45 - UAAUACUGUCUGGUAAUGCCAU - 66
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39