Stem-loop iltv-mir-I1

Accession

MI0012481

Description

Infectious laryngotracheitis virus iltv-mir-I1 precursor miRNA

Sequence

cgcagaggAGACUGAUUGGGGAAUGAUUGGgaagcuugugccAAUUCCAUUCCUCUUUCUGUCUCCaccg
......((((((.((..(((((((((((((.(......).)))))..))))))))..)).))))))....

Structure

cgcaga      U  UU        --     g ag 
      ggAGAC GA  GGGGAAUG  AUUGG a  c
      |||||| ||  ||||||||  ||||| |   
      CCUCUG CU  CUCCUUAC  UAAcc u  u
--gcca      U  UU        CU     g gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature iltv-miR-I1-5p

• Accession: MIMAT0012723
• Description: Infectious laryngotracheitis virus iltv-miR-I1-5p mature miRNA
• Sequence: 9 - AGACUGAUUGGGGAAUGAUUGG - 30
• Evidence: experimental ; Illumina [1]

Mature iltv-miR-I1-3p

• Accession: MIMAT0012724
• Description: Infectious laryngotracheitis virus iltv-miR-I1-3p mature miRNA
• Sequence: 43 - AAUUCCAUUCCUCUUUCUGUCUCC - 66
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19328516
   MicroRNAs of Gallid and Meleagrid herpesviruses show generally conserved genomic locations and are virus-specific
   "Waidner LA, Morgan RW, Anderson AS, Bernberg EL, Kamboj S, Garcia M, Riblet SM, Ouyang M, Isaacs GK, Markis M, Meyers BC, Green PJ, Burnside J"
   "Virology (2009) 388:128-136


2. PubMed ID: 19728068
   Identification and expression analysis of infectious laryngotracheitis virus encoding microRNAs
   "Rachamadugu R, Lee JY, Wooming A, Kong BW"
   "Virus Genes (2009) 39:301-308