miRBase entry: dpu-mir-9

Stem-loop dpu-mir-9


Accession
MI0012252
Description
Daphnia pulex dpu-mir-9 precursor miRNA

Literature search
2 open access papers mention dpu-mir-9
(9 sentences)

Sequence

ucgucauggcgcugcuuuuuUCUUUGGUUAUCUAGCUGUAUGAguguuagaagacgucAUAAAGCUAGGUUACCAAAGUUAagaacugccccucuucaucg
.......((.((.(.((((..(((((((.((((((((.(((((.((((....))))))))).)))))))).)))))))..)))).).)).)).........

Structure
--ucgucau  c  u c    uU       U        G     g    a 
         gg gc g uuuu  CUUUGGU AUCUAGCU UAUGA uguu g
         || || | ||||  ||||||| |||||||| ||||| ||||  
         cc cg c agaA  GAAACCA UGGAUCGA AUAcu gcag a
gcuacuucu  c  u a    UU       U        A     -    a 


Annotation confidence Not enough data
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Genome context
GL732524.1: 1526193-1526293 [+]

Database links

Mature dpu-miR-9-5p

Accession MIMAT0012671
Description Daphnia pulex dpu-miR-9-5p mature miRNA
Sequence 21 - UCUUUGGUUAUCUAGCUGUAUGA - 43
Evidence not_experimental

Mature dpu-miR-79

Accession MIMAT0012668
Description Daphnia pulex dpu-miR-79 mature miRNA
Sequence 59 - AUAAAGCUAGGUUACCAAAGUUA - 81
Evidence

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68