Stem-loop bta-mir-194-1

Accession

MI0012208

Description

Bos taurus bta-mir-194-1 precursor miRNA mir-194

Gene
family

RF00257; mir-194

Literature search

6 open access papers mention bta-mir-194-1
(11 sentences)

Sequence

611300 reads, 4999 reads per million, 75 experiments

uucuuaacggcgucaucgauUGUAACAGCAACUCCAUGUGGAcugugcgucaauuuccaguggagaugcuguuacuuuugauggcugccaauucacu
........(((((((((((..(((((((((.((((((.((((..((......)).)))))))))).)))))))))..)))))))).)))........

Structure

uucuuaac   -        uU         A      G    cu  gc 
        ggc gucaucga  GUAACAGCA CUCCAU UGGA  gu  g
        ||| ||||||||  ||||||||| |||||| ||||  ||   
        ccg cgguaguu  cauugucgu gaggug accu  ua  u
ucacuuaa   u        uu         a      -    -u  ac 

Annotation confidence High

Genome context

chr16: 24405220-24405316 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-194-1

Mature bta-miR-194

• Accession: MIMAT0009254
• Description: Bos taurus bta-miR-194 mature miRNA
• Sequence: 21 - UGUAACAGCAACUCCAUGUGGA - 42
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90