Stem-loop bta-mir-194a-1

Accession

MI0012208

Description

Bos taurus bta-mir-194a-1 precursor miRNA mir-194

Gene
family

RF00257; mir-194

Literature search

7 open access papers mention bta-mir-194a-1
(12 sentences)

Sequence

3107189 reads, 2813.0 reads per million, 321 experiments

uucuuaacggcgucaucgauUGUAACAGCAACUCCAUGUGGAcugugcgucaauuuCCAGUGGAGAUGCUGUUACUUUugauggcugccaauucacu
........(((((((((((..(((((((((.((((((.((((..((......)).)))))))))).)))))))))..)))))))).)))........

Structure

uucuuaac   -        uU         A      G    cu  gc 
        ggc gucaucga  GUAACAGCA CUCCAU UGGA  gu  g
        ||| ||||||||  ||||||||| |||||| ||||  ||   
        ccg cgguaguU  CAUUGUCGU GAGGUG ACCu  ua  u
ucacuuaa   u        UU         A      -    -u  ac 

Annotation confidence High

Genome context

16: 23607933-23608029 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-194a-1

Mature bta-miR-194a-5p

• Accession: MIMAT0009254
• Description: Bos taurus bta-miR-194a-5p mature miRNA
• Sequence: 21 - UGUAACAGCAACUCCAUGUGGA - 42
• Evidence: experimental ; cloned [1]

Mature bta-miR-194a-1-3p

• Accession: MIMAT0060853
• Description: Bos taurus bta-miR-194a-1-3p mature miRNA
• Sequence: 57 - CCAGUGGAGAUGCUGUUACUUU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90