miRBase entry: mtr-MIR2658

Stem-loop mtr-MIR2658


Accession
MI0012006
Description
Medicago truncatula mtr-MIR2658 precursor miRNA


Sequence

1309 reads, 12.0 reads per million, 110 experiments
aaAUGUGACCUUGUAUAUGAUCuggaaggagagaaauauuugauauaagauuuuaaaauuauuauuggucuguucaaccacucCUUAACCAAAUCAAAAUGuuuguuugcauua
.(((((((.(.......((((.(((((((((........((((....(((((..............)))))..))))...))))))..))).))))........).))))))).

Structure
a       C -UUGUAUA    C   --      agaaauau    uaua     uuaaaa 
 aAUGUGA C        UGAU ugg  aaggag        uuga    agauu      u
 ||||||| |        |||| |||  ||||||        ||||    |||||       
 uuacguu g        ACUA ACC  UUCcuc        aacu    ucugg      u
a       u uuuGUAAA    A   AA      -----acc    --ug     uuauua 


Annotation confidence Low
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Genome context
chr5: 40662275-40662388 [-]

Database links

Mature mtr-miR2658-5p

Accession MIMAT0013459
Description Medicago truncatula mtr-miR2658-5p mature miRNA
Sequence 3 - AUGUGACCUUGUAUAUGAUC - 22
Evidence experimental
454 [1]

Mature mtr-miR2658-3p

Accession MIMAT0054969
Description Medicago truncatula mtr-miR2658-3p mature miRNA
Sequence 84 - CUUAACCAAAUCAAAAUG - 101
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796