miRBase entry: mtr-MIR2655m

Stem-loop mtr-MIR2655m


Accession
MI0011999
Description
Medicago truncatula mtr-MIR2655m precursor miRNA


Sequence

7578 reads, 83.0 reads per million, 111 experiments
uucauaaucaauaaaagaucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuuggucccuuuuguugauuuaauucaaaaaaacguuaaguuuagaaccaagcuaauacuaauuaaauaaguuaagggaacaacuaauACUAAUUAAAUCAGUUAAGGGAccaaaauuuaacguuuuuuugaauuaaauuaacauaaaugacaaauacuuuauauaaaguuaagggauccaaacauaccuuuuauuauuuauggga
(((((((..((((((((....((((.((((((((((((((((.((((((((..(((..........(((((((((((((((((((((((((((((((.(..((.((((.....((((((....((((........)))).....))))))....))))...))..).))))))))))))))))))))))))))))))).....)))..)))))))).)))))))))))))))).))))....))))))))..))))))).

Structure
-       uc        aucC    A                u        cg   uggucccuuu                               a aa  --a    aauac      -aaua    aag 
 uucauaa  aauaaaag    GUUU GGUCCCUUAACUUUAu uaaaguau  guu          uguugauuuaauucaaaaaaacguuaaguuu g  cc   agcu     uaauua     aguu   g
 |||||||  ||||||||    |||| |||||||||||||||| ||||||||  |||          ||||||||||||||||||||||||||||||| |  ||   ||||     ||||||     ||||    
 ggguauu  uuauuuuc    caaa cuagggaauugaaaua auuucaua  cag          acaauuaaauuaaguuuuuuugcaauuuaaa c  GG   UUGA     AUUAAU     ucaa   g
a       ua        caua    c                u        aa   -----uaaau                               a cA  GAA    -CUAA      CAuaa    caa 


Annotation confidence Low
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Genome context
chr5: 18553085-18553344 [+]

Database links

Mature mtr-miR2655m-5p

Accession MIMAT0013452
Description Medicago truncatula mtr-miR2655m-5p mature miRNA
Sequence 21 - CGUUUAGGUCCCUUAACUUUA - 41
Evidence experimental
454 [1]

Mature mtr-miR2655m-3p

Accession MIMAT0054964
Description Medicago truncatula mtr-miR2655m-3p mature miRNA
Sequence 143 - ACUAAUUAAAUCAGUUAAGGGA - 164
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796