miRBase entry: mtr-MIR2632c

Dead hairpin entry

Stem-loop mtr-MIR2632c


Accession
MI0011945
Description
Medicago truncatula mtr-MIR2632c precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

40094 reads, 368.0 reads per million, 111 experiments
agaccauuugaAUUUUCGUCCCUGAAGUUACUAAUccuuccaauaugccccugcaaauauuaaucauuugacuuuugaucauaauuacaucugauuaguaacuucagugaugaaaauucaagugaccuauauuuggagggaugaaagaccuauuuaagcaaaccaccuagcccaaucaucacuugccacaugggcaccacgucgcuaaugacaacccaccucaccaaaaaaaccuaauuaggagcaaaagucaaaugauuaauauuuacgggggcagauugaAAGGAUUAGUAACUUCAGggacuaaaauucaaaugaccua
....((((((((((((.((((((((((((((((((((((.((((.((((((((.(((((((((((((((((((((((.((.((((((((.((((.........)))))).(((....))).(((.(((((...(((((((((((..(..(((...............)))..)..))))).))).))).))))))))...(((......)))......................)))))).)).))))))))))))))))))))))).)))))))).)))).)))))))))))))))))))))).)))))))))))).....

Structure
-agac            C                      c    a        c                       a  a      ---caucugauuaguaacuucagugaugaaaauucaa   a     auu   -   -     aa ac   uuuaag 
     cauuugaAUUUU GUCCCUGAAGUUACUAAUccuu caau ugccccug aaauauuaaucauuugacuuuug uc uaauua                                     gug ccuau   ugg agg gauga  g  cua      c
     |||||||||||| |||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| || ||||||                                     ||| |||||   ||| ||| |||||  |  |||      a
     guaaacuuaaaa caggGACUUCAAUGAUUAGGAA guua acgggggc uuuauaauuaguaaacugaaaac ag auuaau                                     cac gggua   acc uuc cuacu  c  gau      a
aucca            u                      a    g        a                       g  g      ccaaaaaaaccacuccacccaacaguaaucgcugcac   -     --c   g   a     aa cc   ccacca