miRBase entry: mtr-MIR2631

Dead hairpin entry

Stem-loop mtr-MIR2631


Accession
MI0011942
Description
Medicago truncatula mtr-MIR2631 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

7818 reads, 74.0 reads per million, 111 experiments
ugugccacguggaccaaucaUGACACGCCACGUGGCACACUagaagacuaaauuuugagaguuugaaguuaaaagauauuucguccacacuuuugguaaauaaaauuuaauuauuaaaacugucaaugauaaaaaaaaauucuuuuucuuaaaaaaaaaaaaaacucauuuaauuauuaauuuaacaauuugguguacugguacacucaaauuuuUGGAUGUACCAUAGAAUUUgccuuauuuuaauuuauuuauuucaauuauaaaauuuuguuuuuagugugccacaugucguguuaugauuguccacguggcacac
((((((((((((((.((((((((((((.((.(((((((((((((.(((.((((((((.....(((((((.((((((....((((..(((.(((((((((.(((...))).))))))))).)))..))))...........))))))...............................(((.((((.(((..((((...(((((((.((((....)))).))))))).......))))..))))))).)))...)))))))...)))))))).)))))))))))))))).)).)))))))))))))))))))))))))).

Structure
-              c            C  C             a   u        agagu       uaaaagauauuucguccacacuuuugguaaauaaaauuuaauuauuaaaacugucaaugauaaaaaaaaauucuuuuucuuaaaaaaaaaaaaaacucauuuaauuau   u    c   uu    ----uac       c    a 
 ugugccacguggac aaucaUGACACG CA GUGGCACACUaga gac aaauuuug     uugaagu                                                                                                            uaa uuaa aau  ggug       ugguaca ucaa u
 |||||||||||||| |||||||||||| || ||||||||||||| ||| ||||||||     |||||||                                                                                                            ||| |||| |||  ||||       ||||||| ||||  
 acacggugcaccug uuaguauugugc gu caccgugugauuu uug uuuaaaau     aacuuua                                                                                                            auu aauu uua  ccgU       ACCAUGU GGUu u
c              -            u  a             -   u        --auu       ---------------------------------------------------------------------------------------------------------uuu   u    -   uu    UUAAGAU       A    u