Dead hairpin entry

Stem-loop mtr-MIR2630p

Accession

MI0011935

Description

Medicago truncatula mtr-MIR2630p precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention mtr-MIR2630p
(2 sentences)

Sequence

19831 reads, 180.0 reads per million, 111 experiments

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaauaaaauauucuacauauuacaaggaccaaauccaauaugauccaAUUUUACAAGGACUAAAAcaaaauaccaaugaccaaaaaccaaauuuuuuauauuugcuugga
((..((((((((((((.((((((((((((((.((((((((((((((((.((((((((((((....((((((((...(((((((...((((((..(((((((((((((...))).))))))))))............))))))...)))))))...))))))))....)))))))))))).)))))))))))))))).)))).)))))))))).))))))))))))..)).

Structure

-  cu            u          -    C                a            cauu        aaa       cua      ----------uc          -   u 
 cc  gcaaauauagaa auuUGGUUUU GGUC UUGGUAUUUuguuuua uccuuguaaaau    ucauauug   uuggucc   uaauau            auuuuagucc uca  
 ||  |||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||    ||||||||   |||||||   ||||||            |||||||||| ||| u
 gg  cguuuauauuuu uaaaccaaaa ccag aaccauaaaacAAAAU AGGAACAUUUUA    aguauaac   aaccagg   auuaua            uaaaaucagg agu  
a  uu            u          a    u                C            accu        cua       aac      caucuuauaaaa          g   u