Stem-loop mtr-MIR2630f

Accession

MI0011925

Description

Medicago truncatula mtr-MIR2630f precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630f
(2 sentences)

Sequence

18553 reads, 174.0 reads per million, 111 experiments

cccugcaaauauauaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauauaaaucaauuuuacaaggauuaaaACAAAAUACCAAGGACCAAAAccaaauuuuuuauauuugcaagga
((.((((((((((.((.((((((((((((((((((((((((((((((((((((((((((((.((((.((((((...(((((((...((((((..(((((((((((........)))))))))))............))))))...)))))))...))))))))))..)))))))))))))))))))))))))))))))))))))))))))).)).)))))))))).)).

Structure

-  c          u  u                                            -c    c      aaa       cua      ----------uc           cgu 
 cc ugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaau  auuu auauug   uuggucc   uaauau            auuuuaguccu   u
 || |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||   |||||||   ||||||            |||||||||||    
 gg acguuuauau uu uaaaccAAAACCAGGAACCAUAAAACAaaauuaggaacauuuua  uaaa uauaac   aaccagg   auuaua            uaaaaucaggg   u
a  a          u  u                                            ac    -      cua       aac      caucuuauaaac           agu 

Annotation confidence Low

Genome context

chr3: 38109549-38109777 [+]

Mature mtr-miR2630f-5p

• Accession: MIMAT0013378
• Description: Medicago truncatula mtr-miR2630f-5p mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630f-3p

• Accession: MIMAT0054899
• Description: Medicago truncatula mtr-miR2630f-3p mature miRNA
• Sequence: 185 - ACAAAAUACCAAGGACCAAAA - 205
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796