Stem-loop mtr-MIR2630y

Accession

MI0011922

Description

Medicago truncatula mtr-MIR2630y precursor miRNA

Literature search

2 open access papers mention mtr-MIR2630y
(2 sentences)

Sequence

32980 reads, 305.0 reads per million, 111 experiments

acugcaaauauaaaaaauuUGGUUUUGGUCCUUGGUAUUUuguuuuaguccuuguaaaauugauucauauuggauuuggucauuguaauauguagaauauuugauuuuagucccucaaaaugAGGACUAAAAUGAAUAUUAUAGggaccaauuucaauaugaaaugauuuuacaaggauuaaaacaaaauaccaaggaucaaaaccaaauauucuauauuugcagg
.(((((((((((.((.((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((.((((((.(((((((((..........(.((((((((((.(((...))))))))))))).)))))))))).)))))).))))))))))).)))))))))))))))))))))))))))))))))))))))))))))).)).))))))))))).

Structure

a           a  a                                              a           u      a         guagaauauu g          c   a 
 cugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuuaguccuuguaaaauug uucauauugga uugguc uuguaauau          u auuuuagucc uca  
 ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||          | |||||||||| ||| a
 gacguuuauau uu uaaaccaaaacuaggaaccauaaaacaaaauuaggaacauuuuagu aaguauaacuu aaccag GAUAUUAUA          A UAAAAUCAGG Agu  
g           c  a                                              a           u      g         ---------- G          -   a 

Annotation confidence Medium

Genome context

chr2: 11627635-11627860 [-]

Mature mtr-miR2630y-5p

• Accession: MIMAT0013375
• Description: Medicago truncatula mtr-miR2630y-5p mature miRNA
• Sequence: 20 - UGGUUUUGGUCCUUGGUAUUU - 40
• Evidence: experimental ; 454 [1]

Mature mtr-miR2630y-3p

• Accession: MIMAT0054896
• Description: Medicago truncatula mtr-miR2630y-3p mature miRNA
• Sequence: 123 - AGGACUAAAAUGAAUAUUAUAG - 144
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796