miRBase entry: mtr-MIR2629g

Dead hairpin entry

Stem-loop mtr-MIR2629g


Accession
MI0011916
Description
Medicago truncatula mtr-MIR2629g precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

19439 reads, 182.0 reads per million, 111 experiments
aauuauggaaucagcuacaguuaauuaucaaagAAAACUUCGACAGUUAAuugccgcggaguuuuaaaauuaaaauuuaacaccucaugcucuuuauuaaaugcauacguuauaucauuuaauaaagaguaugugguguuugauuuaauuuaauuugauauuaacauaaauaaauggcagauaugugcauguguguuaaauuuuaauuuugaaacuccgcggcaguaacugccgaaguUUUCCUCGGUAGUUAACUGCAaaaguuuccucgaua
.(((..((((.......((((((((((((...((((((((((.((((((.(((((((((((((((((((((((((((((((((..((((((((((((((((((.(((.....)))))))))))))))))))))(((((((.((((......)))).))))))).(((......)))(((......)))....))))))))))))))))))))))))))))))))))))))).))))))))))...)))))))))))).......))))..))).

Structure
a   au    ucagcua            aaa          A      A                                 ---------------------------------------------------------cu                  c   c 
 auu  ggaa       caguuaauuauc   gAAAACUUCG CAGUUA uugccgcggaguuuuaaaauuaaaauuuaacac                                                           caugcucuuuauuaaaug aua g
 |||  ||||       ||||||||||||   |||||||||| |||||| |||||||||||||||||||||||||||||||||                                                           |||||||||||||||||| ||| u
 uag  ccuu       GUCAAUUGAUGG   CUUUugaagc gucaau gacggcgccucaaaguuuuaauuuuaaauugug                                                           guaugagaaauaauuuac uau u
a   cu    ugaaaAC            CUC          c      -                                 uguacguguauagacgguaaauaaauacaauuauaguuuaauuuaauuuaguuuguggu                  -   a