miRBase entry: mtr-MIR2628

Dead hairpin entry

Stem-loop mtr-MIR2628


Accession
MI0011909
Description
Medicago truncatula mtr-MIR2628 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

6516 reads, 80.0 reads per million, 111 experiments
aggugacaacuaagcuacuCAUGAAAGAAUGAUGAGUAAuuuaccccaaccaauacauauuagccacauaagcacauauauucaugaacuauuuugacuccacaaauaaauugcucauuuucuucAAAGGUAAUUUAGAAAAAACCA
.(((.....(((((.((((..((((.(((.(((((((((((((.............((((..((.......))..)))).............((((......))))))))))))))))))))))))..)))).))))).....))).

Structure
a   gacaa     c    CA    A   U             --------------ccccaaccaauac    ua  ca 
 ggu     cuaag uacu  UGAA GAA GAUGAGUAAuuua                           auau  gc  c
 |||     ||||| ||||  |||| ||| |||||||||||||                           ||||  ||  a
 CCA     GAUUU AUGG  Acuu cuu uuacucguuaaau                           uaua  cg  u
A   AAAAA     A    AA    -   -             aaacaccucaguuuuaucaaguacuua    ca  aa