miRBase entry: mtr-MIR2626

Dead hairpin entry

Stem-loop mtr-MIR2626


Accession
MI0011894
Description
Medicago truncatula mtr-MIR2626 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

1514 reads, 15.0 reads per million, 110 experiments
acuuauuauuaaauaaaaacAACGUCGGGAUUUAGGGUGUUauaaguuguguugaacuggguuaacaaacucuauguguuuuuuacuuuccugccuuuuauuuuuuuguuuuguuuaugcuuacugcuagcgugauguuggaacuuuaaauggaacauaugcuguCUGUGCAUCUGAAAUUGAAACAUCAcauagaacaacuucuaauuaacacgcuaaaauucaacauccguuauauuugccuugaucuguc
((..((((.((((((..(((...((.(((.(((((.((((((.((((((((((((......)))))....((((((((..(((((.((((.....((((((((....((((((.(((((((.......)))))))...))))))...))))))))...((((.......))))..)))).)))))...))))))))))))))).....)))))).))))).))).))....))).))))))...))))..)).

Structure
-  uu    --u      aa   -AAC  C   A     G      ----u       guugaacuggguuaacaaac        -uu     c    cugccuuuuauuuuuuuguuuuguuuaugcuuacugcuagcgugauguuggaacuuuaaauggaacau    ug 
 ac  auua   uaaaua  aac    GU GGG UUUAG GUGUUa     aaguugu                    ucuaugug   uuuua uuuc                                                                    augc  u
 ||  ||||   ||||||  |||    || ||| ||||| ||||||     |||||||                    ||||||||   ||||| ||||                                                                    ||||  C
 ug  uagu   guuuau  uug    ca cuu aaauc cacaau     uucaaca                    agauacAC   AAAGU AAAG                                                                    UACG  U
c  uc    ucc      -a   ccua  a   a     g      uaauc       --------------------        UAC     U    ------------------------------------------------------------------UC    UG