Stem-loop mtr-MIR2619a

Accession

MI0011886

Description

Medicago truncatula mtr-MIR2619a precursor miRNA

Literature search

1 open access papers mention mtr-MIR2619a
(1 sentences)

Sequence

agcccccuaacuaauuaaaauacaaaacaauccccuauguauuggaucuuugacaguuuuagcucccaagaccacuuuugauuuagucuuuguugacguggcacccacaauggucgaaacgugauaccucgcuuaagggaugugggugccacgucagcgaagauuaagucaaaagugguuuuggaggccaaaacugccaaagauccaauACAUAGGAGGCUGUUUUGUAUuuuaauuuguuaggauguc
.((..((((((.(((((((((((((((((..(((((((((((((((((((((.(((((((.(((.((((((((((((((((((((((((((((((((((((((((((((....((..((.((((....))))))..))..)))))))))))))))))))))))))))))))))))))))))))).))).))))))).))))))))))))))))))).)).))))))))))))))))).))))))..)).

Structure

a  cc      u                 au  -                   a       a   c                                            augg  ga  c    u 
 gc  ccuaac aauuaaaauacaaaaca  cc ccuauguauuggaucuuug caguuuu gcu ccaagaccacuuuugauuuagucuuuguugacguggcacccaca    uc  aa guga a
 ||  |||||| |||||||||||||||||  || ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    ||  || ||||  
 ug  ggauug uuaauuuUAUGUUUUGU  GG GGAUACAuaaccuagaaac gucaaaa cgg gguuuuggugaaaacugaauuagaagcgacugcaccgugggugu    gg  uu cgcu c
c  ua      u                 -C  A                   c       c   a                                            --ag  aa  -    c 

Annotation confidence Not enough data

Genome context

chr8: 20630374-20630622 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2619a

Mature mtr-miR2619a

• Accession: MIMAT0013339
• Description: Medicago truncatula mtr-miR2619a mature miRNA
• Sequence: 210 - ACAUAGGAGGCUGUUUUGUAU - 230
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796