miRBase entry: mtr-MIR2616

Dead hairpin entry

Stem-loop mtr-MIR2616


Accession
MI0011879
Description
Medicago truncatula mtr-MIR2616 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

2637 reads, 19.0 reads per million, 111 experiments
ucaaAUUGGGUUUGGUUCGGGCGGAUaaccacggguauggauuuuguugccaugccuaccuccaagcuacuaaagacaccuucagaagaaccuguuuaugccaacuaagaucucucguugcaucaacauccauauuuugaugcaauuggaugcaacaucccuaaauuuguuccuuaauuccuauguuauuuccuuuuuuuuauauauacaaaagacgauacaacUCUGUGCUUUGUAGUAAUAACCAAAauuguuaauuuuuuuaauaaugucccgugagucuaacucaguuugu
.(((((((((((.((((((.(.((((......((((((((.........))))))))........(((((.((((.(((...(((......)))......................((((((((((..........)))))))))).(((((...)))))........................(((...((.((((((.((....)).)))))).))...)))...))))))))))))..........((((((((.....))))))))))))).)))))).))))))))))).

Structure
u           U      G C    aaccacggguauggauuuuguugccaugccuaccuccaa     u    a   cuucagaagaaccuguuuaugccaacuaagaucucucguugcaucaacauccauauuuugaugcaauuggaugcaacaucccuaaauuuguuccuuaauuccuau   auu  c      u  u 
 caaAUUGGGUU GGUUCG G GGAU                                       gcuac aaag cac                                                                                                         guu   uc uuuuuu ua a
 ||||||||||| |||||| | ||||                                       ||||| |||| |||                                                                                                         |||   || |||||| ||  
 guuugacucaa cugagu c ccug                                       UGAUG UUUC GUG                                                                                                         caa   ag agaaaa au u
u           u      g -    --------uaauaauuuuuuuaauuguuaAAACCAAUAA     -    -   ------------------------------------------------------------------------------------------------------UCU   cau  c      c  a