miRBase entry: mtr-MIR2585c

Dead hairpin entry

Stem-loop mtr-MIR2585c


Accession
MI0011869
Description
Medicago truncatula mtr-MIR2585c precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

52315 reads, 522.0 reads per million, 111 experiments
UAGGGGUCGUUUAAAAAUUGGUCccuguauucgcuaauccuugcaaacuagccuugcaaucauuaaucauuuaaaauuuaguccuuugaccaacuuaaucacugccacgucacuaauuugaugauguggcaaucacugccaaacaugaaauuccaauuuugcccuuaagaagaggacaaaauauugaaaaaggauuggaaauccugggguaaaauuggaauuucauguggcguggcaaugauuaaguggggagauggacgaaauuuuaaaugauuaaacaaugcagggguaaauugcCAGGAUUAGCGAUUACAGGGACcaauuuuuaaacgaccccu
.((((((((((((((((((((((((((((.(((((((((((.((((..((.(((((((....(((((((((((((((((.((((.((..((.(((((((((.(((((((((...............(((((.....))))).(((((((((((((((((((((((.........................((((((...)))))))))))))))))))))))))))))))))))))).))))))))).))..)).)))).)))))))))))))))))....))))))).))..)))).))))))))))).))))))))))))))))))))))))))))

Structure
U                            u           u    ac  g       auca                 a    u  ga  a         c         acuaauuugaugauguggcaaucacugccaa                       uaagaagaggacaaaauauugaaaa      g 
 AGGGGUCGUUUAAAAAUUGGUCccugua ucgcuaauccu gcaa  ua ccuugca    uuaaucauuuaaaauuu gucc uu  cc acuuaauca ugccacguc                               acaugaaauuccaauuuugcccu                         aggauu  
 |||||||||||||||||||||||||||| ||||||||||| ||||  || |||||||    ||||||||||||||||| |||| ||  || ||||||||| |||||||||                               |||||||||||||||||||||||                         |||||| g
 uccccagcaaauuuuuaacCAGGGACAU AGCGAUUAGGA cguu  au gggacgu    aauuaguaaauuuuaaa cagg ag  gg ugaauuagu acggugcgg                               uguacuuuaagguuaaaaugggg                         uccuaa  
-                            U           C    aa  g       aaca                 g    u  ag  g         a         -------------------------------                       -------------------------      a