miRBase entry: mtr-MIR2611

Dead hairpin entry

Stem-loop mtr-MIR2611


Accession
MI0011867
Description
Medicago truncatula mtr-MIR2611 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

22142 reads, 197.0 reads per million, 111 experiments
ugauuuuguauuugucaguguuugaugaaucugugggaugcgugcuuggucaacaagaugagacUGGAAAGAAAGAACAUGCUAUCuacuaucugagcaagaaguucaccgacugugaaacucgguauacaaugcuugagaagacuuguuguggucuagcuugggcugccaaacgccugcgucauuauuuggugaaucauacaacuugguugauauccagaauggauccgaucaaguauaucuuugagaaagcugcuguuacUGGGAAGAUUGCACGCUGGCAgaugcuuuugucu
.(((...((((((((((((((.((((...((.((((.(.(((.((((..((((..((((((((.(((..(((.((......)).))).)))))).........(((((((((..((((..(..(((.......(((((((.(((((......)))))..)))))))........))).)..))))...)))))))))......(((((((((..(((((...))))).))))))))).)))))))))..)))))))).)))).))....)))).))))))))))))))....))).

Structure
u   -uuu              u    -gaa  u    g u   u    gg    ca     ------------------------------------------------------------------------------------------------------------------------------------------------   c   AA   A  AA 
 gau    guauuugucagugu ugau    uc gugg a gcg gcuu  ucaa  agaug                                                                                                                                                aga UGG  AGA AG  C
 |||    |||||||||||||| ||||    || |||| | ||| ||||  ||||  |||||                                                                                                                                                ||| |||  ||| ||   
 cug    cguagACGGUCGCA GUUA    GG cauu u cgu cgaa  aguu  ucuau                                                                                                                                                ucu auc  uCU UC  A
u   uuuu              C    GAAG  U    g -   -    ag    --     augaacuagccuagguaagaccuauaguugguucaacauacuaagugguuuauuacugcguccgcaaaccgucggguucgaucugguguuguucagaagaguucguaacauauggcucaaagugucagccacuugaagaacgag   -   -a   A  GU