Stem-loop mtr-MIR2608

Accession

MI0011861

Description

Medicago truncatula mtr-MIR2608 precursor miRNA

Sequence

auugcaaagagaaaugauauuuguacaacuauuuucuaacaacuuuuugacaacuuucucucucagacucacauuaucuucuuauucccucucuuccuuuuucucucucucucucucucucuauuauuuuugaccaaucaaaagagagaaaaccaaaguugucaugaaaguuguaccaaagaGUUGUACAUAUAUCACUACUCUauugcaaa
.((((((((((...((((((.(((((((((.((((...(((((((((((((((((((.(((...)))...............................((((((((((....................(((((....)))))))))))))))..)))))))))).)))))))))...))))))))))))).))))))...)))).)))))).

Structure

a      -    aaa      u         a    cua         -          cucucucagacucacauuaucuucuuauucccucucuuccu          cucucucucucucuauuauu     c 
 uugcaa agag   ugauau uguacaacu uuuu   acaacuuuu ugacaacuuu                                         uuuucucucu                    uuuga c
 |||||| ||||   |||||| ||||||||| ||||   ||||||||| ||||||||||                                         ||||||||||                    |||||  
 aacguu UCUC   ACUAUA ACAUGUUGa gaaa   uguugaaag acuguugaaa                                         aaaagagaga                    aaacu a
a      a    AUC      U         -    cca         u          ---------------------------------------cc          --------------------     a 

Annotation confidence Not enough data

Genome context

chr3: 29324716-29324927 [+]

Mature mtr-miR2608

• Accession: MIMAT0013314
• Description: Medicago truncatula mtr-miR2608 mature miRNA
• Sequence: 183 - GUUGUACAUAUAUCACUACUCU - 204
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796