miRBase entry: mtr-MIR2606b

Dead hairpin entry

Stem-loop mtr-MIR2606b


Accession
MI0011858
Description
Medicago truncatula mtr-MIR2606b precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

10509 reads, 135.0 reads per million, 111 experiments
aggagaaaacuuaggUACAAUUCCUUAGGUGCUUUUuguaugguucuuuacuaaauuuaccaugauuuccucaaaugcauaauuuucucaaaguuuguuauauccaaauaauauguauuuuuaguuaagaaccauaugaaaagcacauaagGAAUUGUACCUAAGUUUUCUCCa
.((((((((((((((((((((((((((.((((((((((((((((((((.((((((..(((....((((........(((.((((((...))))))))).......)))).....)))..)))))).)))))))))))))))))))).)))))))))))))))))))))))))).

Structure
a                          G                    u      uu   -caug    ccucaaau   u      c 
 ggagaaaacuuaggUACAAUUCCUUA GUGCUUUUuguaugguucuu acuaaa  uac     auuu        gca aauuuu  
 |||||||||||||||||||||||||| |||||||||||||||||||| ||||||  |||     ||||        ||| |||||| u
 CCUCUUUUGAAUCCAUGUUAAGgaau cacgaaaaguauaccaagaa ugauuu  aug     uaaa        ugu uugaaa  
a                          a                    u      uu   uauaa    -ccuauau   -      c