miRBase entry: mtr-MIR2605

Dead hairpin entry

Stem-loop mtr-MIR2605


Accession
MI0011856
Description
Medicago truncatula mtr-MIR2605 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

46225 reads, 491.0 reads per million, 111 experiments
agauguacacuuaaacuuaguuuauaugaccuacuuaaacuggguuuacaugagcuacuuaaacuaaguUUACAUGAUCUACUUAAACUGAGUuuaaauauguacacuuaaacuuaguuuacaugaccuacuuaaaauaaguuuacauguacauacuuaaacugagauuacauagaaucauugaacaagguugaacuuuuaaauguacacuuaaacucgguuuacaugaccuauuuaaacuuaguuuaaguauguacACUUAAACUCAGUUUACAUGACCUcc
.((.((.((..((((((.((((((..((((.((((((((((((((((((((..........((((..(((((.((((((((..(((.((.(((((((.((((((((..((((((((.((((...........)))).))))))))..)))))))).))))))).)).)))..))).))))))))))..))))..........)))))...........((((.....))))......))))))))))))))).)).))..)))))).))))))..)))).)).

Structure
a  u  a  cu      u      ua  -  c               ------------------------------     gagcuacuua    aa     C     -   CU   A  G       a        cu        g    caug 
 ga gu ca  uaaacu aguuua  ug ac uacuuaaacuggguu                              uacau          aacu  guUUA AUGAU CUA  UAA CU AGUuuaa uauguaca  uaaacuua uuua    a
 || || ||  |||||| ||||||  || || |||||||||||||||                              |||||          ||||  ||||| ||||| |||  ||| || ||||||| ||||||||  |||||||| ||||    c
 cU CA GU  AUUUGA UCAAAU  Ac ug augaauuugauucaa                              augua          uugg  caagu uacua gau  auu ga ucaaauu auacaugu  auuugaau aaau    c
c  C  -  AC      C      UC  a  u               auuuauccaguacauuuggcucaaauucac     aauuuucaag    aa     -     a   ac   a  g       c        ac        a    ucau