miRBase entry: mtr-MIR2601

Stem-loop mtr-MIR2601


Accession
MI0011851
Description
Medicago truncatula mtr-MIR2601 precursor miRNA


Sequence

17337 reads, 135.0 reads per million, 111 experiments
auuuugguccuuuaaguauuuauuugguaucgcuuuggucccuuaACUAAAAAAAAGAUUGUUUGAGuacuuuaauuuaauuuucguuacauuuuuugguccauuccguuagguuuaauaaaaaauguuaagugugauacacgugucguuuuggcauuggcucuggaaacaUUAAGGGACCAAAGUGAUACcaaauaaauacuuacgggaccaaaag
.((((((((((.((((((((((((((((((((((((((((((((((.............(((((((((....................((((((((((.......((....)).....))))))))))...((((...))))(((((.....)))))..))))...))))))))))))))))))))))))))))))))))))))).)))))))))).

Structure
a          u                                  CUAAAAAAAAGAU     ---    -----------acuuuaauuuaauuuucguu          guccauu  g 
 uuuugguccu uaaguauuuauuugguaucgcuuuggucccuuaA             UGUUU   GAGu                               acauuuuuug       cc u
 |||||||||| ||||||||||||||||||||||||||||||||||             |||||   ||||                               ||||||||||       ||  
 aaaaccaggg auucauaaauaaacCAUAGUGAAACCAGGGAAUU             acaaa   cucg                               uguaaaaaau       gg u
g          c                                  -------------     ggu    guuacgguuuugcugugcacauagugugaau          --aauuu  a 


Annotation confidence Low
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Genome context
chr4: 45064513-45064729 [+]

Database links

Mature mtr-miR2601-5p

Accession MIMAT0013304
Description Medicago truncatula mtr-miR2601-5p mature miRNA
Sequence 46 - ACUAAAAAAAAGAUUGUUUGAG - 67
Evidence experimental
454 [1]

Mature mtr-miR2601-3p

Accession MIMAT0054837
Description Medicago truncatula mtr-miR2601-3p mature miRNA
Sequence 172 - UUAAGGGACCAAAGUGAUAC - 191
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796