Stem-loop mtr-MIR2599

Accession

MI0011849

Description

Medicago truncatula mtr-MIR2599 precursor miRNA

Sequence

47840 reads, 387.0 reads per million, 111 experiments

uaaacaaagaauaaaacauaugggUACAAGGAAUCUACUUUAUUCAacacacuaaccuaauuuccgagacauuuuacaugccugaaacaugucuuagaaauuaugguuuuucuugguUUGUGUGCUGAACAAAGUAGAUUCcuuguacccacaugauuuauuccuuguuuau
(((((((.(((((((.(((.(((((((((((((((((((((.((((.(((((.(((((((((((.(((((((.((.((....)).)).))))))).)))))))...........)))).))))).)))).))))))))))))))))))))).))).))))))).))))))).

Structure

-       a       a   a                     A    a     u    -----------       c       u  a  u 
 uaaacaa gaauaaa cau ugggUACAAGGAAUCUACUUU UUCA cacac aacc           uaauuuc gagacau uu ca g
 ||||||| ||||||| ||| ||||||||||||||||||||| |||| ||||| ||||           ||||||| ||||||| || ||  
 auuuguu cuuauuu gua acccauguucCUUAGAUGAAA AAGU GUGUG Uugg           auuaaag uucugua aa gu c
u       c       a   c                     C    C     U    uucuuuuuggu       a       c  a  c 

Annotation confidence Low

Genome context

chr1: 12574785-12574956 [-]

Mature mtr-miR2599-5p

• Accession: MIMAT0013302
• Description: Medicago truncatula mtr-miR2599-5p mature miRNA
• Sequence: 25 - UACAAGGAAUCUACUUUAUUCA - 46
• Evidence: experimental ; 454 [1]

Mature mtr-miR2599-3p

• Accession: MIMAT0054835
• Description: Medicago truncatula mtr-miR2599-3p mature miRNA
• Sequence: 118 - UUGUGUGCUGAACAAAGUAGAUUC - 141
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796