miRBase entry: mtr-MIR2598

Dead hairpin entry

Stem-loop mtr-MIR2598


Accession
MI0011848
Description
Medicago truncatula mtr-MIR2598 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

28519 reads, 282.0 reads per million, 111 experiments
ggacuauuucuugauaaaAUCUAAGGGUGAUUAUUCUGCCAUgucauucuugaaauuuuuuuugaaaaaaucuuucuuaauauauagcauugcucuauuuauuaacaaguguuuuuuuuuuuuuugacaaauuuaucaacaaguauuuuagaaagaaaaaaagaacauuuuguauugaauuuuuuauuuuagacuuuuuaaaacguugacuaaauaucuuagaauagcgauaauuaauaaagagcaaugcuauauaucaagaaagauuuuuucaaaaaaauuucaagAAUGACAUGGCAGAAUAAUCACCCuuagauuuuaucaagaaauaguccu
((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((.(((((((((((((((((..(((((((((((((((((((((((((((...((((............))))...)))))))))))))))).))))).............(((((((...)))))))(((((.((((.....))))..))))).....))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).

Structure
-                                                              u               a                 au      -------------------------------------------------------------     -                gac    uuauc 
 ggacuauuucuugauaaaAUCUAAGGGUGAUUAUUCUGCCAUgucauucuugaaauuuuuuu gaaaaaaucuuucuu auauauagcauugcucu  uuauua                                                             acaag uguuuuuuuuuuuuuu   aaau     a
 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||  ||||||                                                             ||||| ||||||||||||||||   ||||      
 ccugauaaagaacuauuuuagauuCCCACUAAUAAGACGGUACAGUAAgaacuuuaaaaaaa cuuuuuuagaaagaa uauauaucguaacgaga  aauaau                                                             uguuu acaagaaaaaaagaaa   uuua     a
u                                                              -               c                 --      uaauagcgauaagauucuauaaaucaguugcaaaauuuuucagauuuuauuuuuuaaguua     u                gau    ugaac