Stem-loop mtr-MIR2111n

Accession

MI0011846

Description

Medicago truncatula mtr-MIR2111n precursor miRNA

Literature search

3 open access papers mention mtr-MIR2111n
(9 sentences)

Sequence

103752 reads, 730.0 reads per million, 111 experiments

uauauugggugaggaugggaUAAUCUGCAUCCUGAGGUUUAaaacaauaguuacguaauuaccccuaaaaaaauuaguuacauaaucguuucuaAGCCUUGGAGUGCAGAUUAUCuuuuccuuaucaccuaugc
.....((((((((((.((((((((((((((.((((((((((((((....((((.(((((((.............))))))).)))).)))).)))))))))).)))))))))))))).)))...)))))))...

Structure

uauau       ---   u              C          -    aaua    c       ccccu 
     uggguga   gga gggaUAAUCUGCAU CUGAGGUUUA aaac    guua guaauua     a
     |||||||   ||| |||||||||||||| |||||||||| ||||    |||| |||||||     a
     auccacu   ccu uuCUAUUAGACGUG GGUUCCGAau uuug    uaau cauugau     a
--cgu       auu   u              A          c    ---c    a       uaaaa 

Annotation confidence High

Genome context

chr7: 16637529-16637662 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from mtr-MIR2111n

Mature mtr-miR2111n-5p

• Accession: MIMAT0013299
• Description: Medicago truncatula mtr-miR2111n-5p mature miRNA
• Sequence: 21 - UAAUCUGCAUCCUGAGGUUUA - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2111n-3p

• Accession: MIMAT0054832
• Description: Medicago truncatula mtr-miR2111n-3p mature miRNA
• Sequence: 95 - AGCCUUGGAGUGCAGAUUAUC - 115
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796