Stem-loop mtr-MIR2593a

Accession

MI0011827

Description

Medicago truncatula mtr-MIR2593a precursor miRNA

Sequence

23736 reads, 266.0 reads per million, 111 experiments

uuauaagcaaaaauuuacauUUUAGAUUCAUUCAUUUAAUGaugcacauggucuuuauuguagaccacauacaucaUUAAAUGAAUGAACCUAGAAUguaguuuuuuugcuuauau
.((((((((((((.(((((((((((.((((((((((((((((((....((((((.......))))))....)))))))))))))))))).)))))))))))..)))))))))))).

Structure

u            -u           A                  caca      uu 
 uauaagcaaaaa  uuacauUUUAG UUCAUUCAUUUAAUGaug    uggucu  a
 ||||||||||||  ||||||||||| ||||||||||||||||||    ||||||  u
 auauucguuuuu  gaugUAAGAUC AAGUAAGUAAAUUacuac    accaga  u
u            uu           C                  auac      ug 

Annotation confidence Medium

Genome context

chr4: 46167544-46167659 [+]

Mature mtr-miR2593a-5p

• Accession: MIMAT0054822
• Description: Medicago truncatula mtr-miR2593a-5p mature miRNA
• Sequence: 21 - UUUAGAUUCAUUCAUUUAAUG - 41
• Evidence: experimental ; unknown

Mature mtr-miR2593a-3p

• Accession: MIMAT0013280
• Description: Medicago truncatula mtr-miR2593a-3p mature miRNA
• Sequence: 77 - UUAAAUGAAUGAACCUAGAAU - 97
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796