Stem-loop mtr-MIR2592q

Accession

MI0011824

Description

Medicago truncatula mtr-MIR2592q precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592q
(2 sentences)

Sequence

gggauaaauucaaaccugcaaaaCAACAGGACUCAAGCAUUUCGCcaaacaccucauguuuucccuuugaaaauaauaaauuucugugaggcuagcuuuggaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauacauucaucuaaaccagcauaacaaaaauuuaauacuuucaaaggagaaacaugaggcgcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauuagcc
......(((((((((.((..(((((((((((((((((((((((((.((.(.(((((((((((.(((((((((.((.(((((((.(((...(((.(.(((((((((..(((((.(((((.((..((.((((...))))))..)).))))))))))..)))))))))).)))...))).))))))).)).))))))))).))))))))))).).)))))))))))))))))))))))))))..)).)))))))))....

Structure

gggaua         c  ca                         c  a a           c         a  a       c   gag   a c         ug     c     c  cc  a    g 
      aauucaaac ug  aaaCAACAGGACUCAAGCAUUUCGC aa c ccucauguuuu ccuuugaaa ua uaaauuu ugu   gcu g uuuggauga  guauu aagug ca  ga uuga  
      ||||||||| ||  ||||||||||||||||||||||||| || | ||||||||||| ||||||||| || ||||||| |||   ||| | |||||||||  ||||| ||||| ||  || |||| g
      uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu g ggaguacaaag ggaaacuuu au auuuaaa aca   cga c aaaucuacu  cauaa uucac gu  cu aacu  
--ccga         a  ag                         -  c c           a         c  a       a   aua   c -         ua     -     a  uc  -    u 

Annotation confidence Low

Genome context

chr4: 47247440-47247696 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592q

Mature mtr-miR2592q-3p

• Accession: MIMAT0013277
• Description: Medicago truncatula mtr-miR2592q-3p mature miRNA
• Sequence: 218 - AAAUGCUUGAGUCCUGUUGUU - 238
• Evidence: experimental ; 454 [1], Illumina [2]

Mature mtr-miR2592q-5p

• Accession: MIMAT0020944
• Description: Medicago truncatula mtr-miR2592q-5p mature miRNA
• Sequence: 24 - CAACAGGACUCAAGCAUUUCGC - 45
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010